中国农大食品科学与营养工程学院食品科学导师介绍:曹建康
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中国农大农学与生物技术学院硕导介绍:刘凤霞
基本信息姓名:刘凤霞性别:女系别:植物遗传育种学系职称:副教授学位:博士个人简历工作经历:2011-中国农业大学植物遗传育种系副教授
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中国农大农学与生物技术学院硕导介绍:李金杰
基本信息姓名:李金杰性别:女系别:植物遗传育种学系职称:副教授学位:博士个人简历学习简历:1995.9-1999.7延边大学农学院本科
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中国农大农学与生物技术学院博导介绍:Patrick Schnable
博基本信息姓名:PatrickSchnable性别:男系别:植物遗传育种学系职称:长江学者学位:博士个人简历个人简介2009年十一月合作完成了玉米自交系B73的测序工作,并于《Science》发表相关研究结果。2008年-今中国农业大学植物遗传育种系长江学者讲座教授,博士生导师;1988年-今爱荷华州立大学(IowaStateUniversity)教授,植物基因组学研究中心主任,固碳作物研究中心主任;1986年-1988年在德国马普研究所(Max-Planck-Institute)博士后;1986年于爱荷华州立大学(IowaStateUniversity)获得博士学位;1981年于康奈尔大学(CornellUniversity)获得学士学位;更多个人介绍内容请访问:http://schnablelab.plantgenomics.iastate.e/personnel/schnable_patrick.php联系方式联系方式:实验室网址:http://schnablelab.plantgenomics.iastate.e/电子信箱:schnable@iastate.e中国农业大学实验室地址:西校区农学楼412房间研究方向1、玉米遗传学和基因组学2、玉米功能基因组学3、比较基因组学4、生物信息学美国IowaStateUniversity的PatrickSchnable教授是中国农业大学农学与生物技术学院植物遗传育种系长江学者客座教授,是玉米基因组学、功能基因组学和杂种优势遗传机理研究领域世界知名科学家。PatrickSchnable教授2011年在植物遗传育种系继续招收硕士研究生,在中国农业大学完成硕士阶段的学习和硕士研究论文工作,主要从事玉米基因组生物信息学相关研究,如通过全基因组序列分析,解析位点多态性与遗传重组的关系等。PatrickSchnable教授主要通过来北京工作和网络视频实验室会议等方式具体指导研究工作。具体要求:1、符合中国农业大学2011年硕士研究生复试条件的第一志愿和调剂考生。2、有较强的英语交流能力。3、有良好的生物学基础,对生物信息学和基因组学分析有浓厚兴趣。4、有较强的计算机使用能力,熟悉或能较快掌握生物信息学软件及其工作平台(如Linux等),具备编程或能较快学习计算机编程能力。5、英文简历(Resume)和申请信(Personalstatement)。有意申请的考生请将简历和申请信发给Schnable教授(email:schnable@iastate.e),或直接到农学楼412房间与Schnable教授在农大已招在读硕士研究生李德林(delin.bio@gmail.com)或黄银连(yinlianhuang@gmail.com)联系。通过初选的考生将由Schnable教授本人近日直接复试。Schnable教授在IowaStateUniversity的具体情况见http://www.schnablelab.plantgenomics.iastate.e/2011年3月1日论文著作学术论文:2005~2010发表的论文:详细信息及下载请访问:http://schnablelab.plantgenomics.iastate.e/publications/2010(7篇)•FuY*,NMSpringer*,KYing*,CTYeh,ALIniguez,TRichmond,WWu,WBBarbazuk,DSNettleton,JAJeddeloh,PSSchnable(2010)High-resolutiongenotypingviawholegenomehybridizationstomicroarrayscontaininglongoligonucleotideprobes.PLoSOne,5(12):e14178.•FeuilletC,JELeach,JRogers,PSSchnable,KEversole(2010)Cropgenomesequencing:lessonsandrationales.TrendsPlantSci,16(2):77-88.•LaiJ*,RLi*,XXu*,WJin*,MXu*,HZhao,ZXiang,WSong,KYing,MZhang,YJiao,PNi,JZhang,DLi,XGuo,KYe,MJian,BWang,HZheng,HLiang,XZhang,SWang,SChen,JLi,YFu,NMSpringer,HYang,JWang,JDai,PSSchnable,JWang(2010)Genome-widepatternsofgeneticvariationamongelitemaizeinbredlines.NatGenet,42(11):1027-1030.(Epub2010Oct24;Animagefromthismanuscriptwasselectedforinclusiononthecover)•TheInternationalBrachypodiumInitiative(2010)GenomesequencingandanalysisofthemodelgrassBrachypodiumdistachyon.Nature,463(7282):763-768.•FuY,NMSpringer,DGerhardt,KYing,CTYeh,WWu,RASwanson-Wagner,MD'Ascenzo,TMillard,LFreeberg,NAoyama,JKitzman,DBurgess,TRichmond,TAlbert,WBBarbazuk,JAJeddeloh,PSSchnable(2010)Repeatsubtraction-mediatedsequencecapturefromacomplexgenome.PlantJ,62(5):898-909.(Epub:4Mar2010;Animagefromthismanuscriptwasselectedforinclusiononthecover)•LiuS,HDChen,IMakarevitch,RShirmer,SJEmrich,CRDietrich,WBBarbazuk,NMSpringer,PSSchnable(2010)High-throughputgeneticmappingofmutantsviaquantitativesinglenucleotidepolymorphismtyping.Genetics,184:19-26.•BuggsRJA,SChamala,WWu,LGao,GDMay,PSSchnable,DESoltis,PSSoltis,WBBarbazuk(2010)CharacterizationofplicategeneevolutionintherecentnaturalallopolyploidTragopogonmiscellusbynext-generationsequencingandSequenomiPLEXMassARRAYgenotyping.MolecularEcology,19(s1):132-146.2009(16篇)•LiuS,CRDietrich,PSSchnable(2009)DLA-basedstrategiesforcloninginsertionmutants:cloningthegl4locusofmaizeusingMutransposontaggedalleles.Genetics,183:1215-1225.(SelectedasanEditors'ChoicebyMaizeGDB,11/09)•SchnablePS*,DWare*,RSFulton,etal(2009)TheB73maizegenome:complexity,diversityanddynamics.Science,326(5956):1112-1115.(HighlightedbyFacultyof1000Biology;Animagefromthismanuscriptwasselectedforinclusiononthecover)•JiaY,DRLisch,KOhtsu,MJScanlon,DSNettleton,PSSchnable(2009)LossofRNA-dependentRNAPolymerase2(RDR2)functioncauseswidespreadandunexpectedchangesintheexpressionoftransposons,genesand24-ntsmallRNAs.PLoSGenetics,5(11):e1000737.(SelectedasanEditors'ChoicebyMaizeGDB,12/09)•WeiF,JCStein,..PSSchnable,..etal(2009)Detailedanalysisofacontiguous22-Mbregionofthemaizegenome.PLoSGenetics,5(11):e1000728.(SelectedasanEditors'ChoicebyMaizeGDB,12/09)•Swanson-WagnerRA,RDeCook,YJia,TBancroft,TJi,XZhao,DSNettleton,PSSchnable(2009)Paternaldominanceoftrans-eQTLinfluencesgeneexpressionpatternsinmaizehybrids.Science,326(5956):1118-1120.(HighlightedbyFacultyof1000Biology)•SpringerNM*,KYing*,YFu,TJi,CTYeh,YJia,WWu,TRichmond,JKitzman,HRosenbaum,ALIniguez,WBBarbazuk,JAJeddeloh,DSNettleton,PSSchnable(2009)MaizeinbredsexhibithighlevelsofCNVandpresence/absencedifferencesingenomecontent.PLoSGenetics,5(11):e1000734.(SelectedasanEditors'ChoicebyMaizeGDB,12/09)•WeiF,JZhang,SZhou,RHe,MLSchaeffer,KCollura,DKudrna,BPFaga,MWissotski,WGolser,SMRock,TAGraves,RSFulton,ECoe,PSSchnable,DCSchwartz,DWare,SWClifton,RKWilson,RAWing(2009)ThephysicalandgeneticframeworkofthemaizeB73genome.PLoSGenetics,5(11):e1000715.(SelectedasanEditors'ChoicebyMaizeGDB,12/09)•LiuS,CTYeh,TJi,KYing,HWu,HMTang,YFu,DSNettleton,PSSchnable(2009)Mutransposoninsertionsitesandmeioticrecombinationeventsco-localizewithepigeneticmarkersforopenchromatinacrossthemaizegenome.PLoSGenetics,5(11):e1000733.(SelectedasanEditors'ChoicebyMaizeGDB,12/09)•ChouHH,ATrisiriroj,SPark,YICHsing,PCRonald,PSSchnable(2009)DirectcalibrationofPICKY-designedmicroarrays.BMCBioinformatics,10(34).•SoltisDE,RJABuggs,WBBarbazuk,PSSchnable,PSSoltis(2009)Ontheoriginsofspecies:doesevolutionrepeatitselfinpolyploidpopulationsofindependentorigin?.ColdSpringHarborSymposiaonQuantitativeBiology.•ScanlonMJ,KOhtsu,MCPTimmermans,PSSchnable(2009)Lasermicrodissection-mediatedisolationandinvitrotranscriptionalamplificationofplantRNA.CurrProtocMolBiol,Unit25A.3.•BrooksIIIL,JStrable,XZhang,KOhtsu,RZhou,ASarkar,SHargreaves,RJElshire,DEudy,TPawlowska,DWare,DJanick-Buckner,BBuckner,MCPTimmermans,PSSchnable,DSNettleton,MJScanlon(2009)Microdissectionofshootmeristemfunctionaldomains.PLoSGenetics,5(5):e1000476.(Epub:8May2009)•WeiY,MLin,DJOliver,PSSchnable(2009)TheRolesofaldehydedehydrogenases(ALDHs)inthePDHbypassofarabidopsis.BMCBiochemistry,10(7).•NogueiraFTS,DHChitwood,SMadi,KOhtsu,PSSchnable,MJScanlon,MCPTimmermans(2009)RegulationofsmallRNAaccumulationinthemaizeshootapex.PLoSGenetics,5(1):e1000320.(SelectedasanEditors'ChoicebyMaizeGDB,6/09)•ShimizuR,JJi,EKelsey,KOhtsu,PSSchnable,MJScanlon(2009)TissuespecificityandevolutionofmeristematicWOX3function.PlantPhysiol,149(2):841-850.(HighlightedbyFacultyof1000Biology)•JacksonBG,PSSchnable,SAluru(2009)Parallelshortsequenceassemblyoftranscriptomes.BMCBioinformatics,10(Suppl1):S14.2008(8篇)•SkibbeDS,XWang,LABorsuk,DAAshlock,DSNettleton,PSSchnable(2008)Floret-specificdifferencesingeneexpressionandsupportforthehypothesisthattapetaldegenerationofZeamaysL.occursviaprogrammedcelldeath.JournalofGeneticsandGenomics,35(10):603-616.•JungKH,CDDardick,LEBartley,PCao,JPhetsom,PCanlas,YSSeo,MShultz,SOuyang,QYuan,BCFrank,ELy,LZheng,YJia,APHsia,KAn,HHChou,DRocke,GCLee,PSSchnable,GAn,CRBuell,PCRonald(2008)Refinementoflight-responsivetranscriptlistsusingriceoligonucleotidearrays:evaluationofgene-rendancy.PLoSOne,3(10):e3337.•StrableJ,LABorsuk,DSNettleton,PSSchnable,EEIrish(2008)Microarrayanalysisofvegetativephasechangeinmaize.PlantJ,56(6):1045-1057.•LuR,GCLee,MShultz,CDDardick,KHJung,JPhetsom,YJia,RHRice,ZGoldberg,PSSchnable,PCRonald,DRocke(2008)Assessingprobe-specificdyeandslidebiasesintwo-colormicroarraydata.BMCBioinformatics,9(314).•BucknerB,KASwaggart,CCWong,HASmith,KMAurand,MJScanlon,PSSchnable,DJanick-Buckner(2008)ExpressionandnucleotidediversityofthemaizeRIKgene.JHered,99(4):407-416.(Epub:2008Feb28)•HochholdingerF,TJWen,RZimmermann,PChimit-Marolle,OdaCostaeSilva,WBruce,KRLamkey,UWienand,PSSchnable(2008)Themaize(ZeamaysL.)roothairless3geneencodesaputativeGPI-anchored,monocot-specific,COBRA-likeproteinthatsignificantlyaffectsgrainyield.PlantJ,54(5):888-898.(SelectedasanEditors'ChoicebyMaizeGDB,6/08)•LiJ,TJWen,PSSchnable(2008)TheroleofRAD51intherepairofMuDR-inceddouble-strandbreaksinmaize(ZeamaysL.).Genetics,178(1):57-66.(SelectedasanEditors'ChoicebyMaizeGDB,2/08)•JacksonBG,SAluru,PSSchnable(2008)Consensusgeneticmapsasmedianordersfrominconsistentsources.IEEE/ACMTransactionsonComputationalBiologyandBioinformatics,5(2):161-171.2007(12篇)•DembinskyD,KWoll,MSaleem,YLiu,YFu,LABorsuk,TLamkemeyer,CFladerer,JMadlung,WBBarbazuk,ANordheim,DSNettleton,PSSchnable,FHochholdinger(2007)Transcriptomicandproteomicanalysesofpericyclecellsofthemaizeprimaryroot.PlantPhysiol,145(3):575-588.•OhtsuK,MBSmith,SJEmrich,LABorsuk,RZhou,TChen,XZhang,MCPTimmermans,JBeck,BBuckner,DJanick-Buckner,DSNettleton,MJScanlon,PSSchnable(2007)Globalgeneexpressionanalysisoftheshootapicalmeristemofmaize(ZeaMaysL.).PlantJ,52(3):391-404.(HighlightedbyFacultyof1000Biology)•BarbazukWB,SJEmrich,HDChen,LLi,PSSchnable(2007)SNPdiscoveryvia454transcriptomesequencing.PlantJ,51(5):910-918.(CitedinWikipedia:http://en.wikipedia.org/wiki/RNA-Seq)•ZhangX,SMadi,LABorsuk,DSNettleton,BBuckner,DJanick-Buckner,JBeck,MCPTimmermans,PSSchnable,MJScanlon(2007)Lasermicrodissectionofnarrowsheathmutantmaizeuncoversnovelgeneexpressionintheshootapicalmeristem.PLoSGenetics,3(6):1040-1052.(SelectedanEditors'ChoicebyMaizeGDB,7/07)•LiJ,LCHarper,IGolubovskaya,CRWang,DWeber,RBMeeley,JMcElver,BBowen,WZCande,PSSchnable(2007)FunctionalanalysisofmaizeRAD51inmeiosisanddouble-strandbreakrepair.Genetics,176(3):1469-1482.(SelectedbyeditorsofGeneticsasan"IssueHighlight";selectedasanEditors'ChoicebyMaizeGDB,8/07)•BucknerB,JBeck,KFBrowning,AEFritz,LGrantham,EHoxha,ZKamvar,ALough,ONikolova,PSSchnable,MJScanlon,DJanick-Buckner(2007)Involvingundergraatesintheannotationandanalysisofglobalgeneexpressionstudies:creationofamaizeshootapicalmeristemexpressiondatabase.Genetics,176(2):741-747.•LiJ,APHsia,PSSchnable(2007)Recentadvancesinplantrecombination.CurrentOpinioninPlantBiology,10(2):131-135.(Epub:2007Feb8)•TraversSE,MDSmith,JBai,SHHulbert,JELeach,PSSchnable,AKKnapp,GAMilliken,PAFay,ASaleh,KAGarrett(2007)Ecologicalgenomics:makingtheleapfrommodelsystemsinthelabtonativepopulationsinthefield.FrontEcolEnviron,5(1):19-24.•OhtsuK,HTakahashi,PSSchnable,MNakazono(2007)Celltype-specificgeneexpressionprofilinginplantsbyusingacombinationoflasermicrodissectionandhigh-throughputtechnologies.PlantCellPhysiol,48(1):3-7.(Epub:2006Dec5)•EmrichSJ*,LLi*,TJWen,MDYandeau-Nelson,YFu,LGuo,HHChou,SAluru,DAAshlock,PSSchnable(2007)Nearlyidenticalparalogs(NIPs)andimplicationsformaizegenomeevolution.Genetics,175(1):429-439.(FeaturedinScience(315:302)asinEditor'sChoice:Highlightsoftherecentliterature;selectedasanEditors'ChoicebyMaizeGDB,12/06)•EmrichSJ*,WBBarbazuk*,LLi,PSSchnable(2007)GenediscoveryandannotationusingLCM-454transcriptomesequencing.GenomeRes,17(1):69-73.(Epub:2006Nov9)•KalyanaramanA,SJEmrich,PSSchnable,SAluru(2007)Assemblinggenomesonlarge-scaleparallelcomputers.JournalofParallelandDistributedComputing,67:1240-1255.(SpecialissuedevotedtoIPDPSbestpapers)2006(7篇)•FuY,TJWen,YIRonin,HDChen,LGuo,DIMester,YYang,MLee,ABKorol,DAAshlock,PSSchnable(2006)Geneticdissectionofintermatedrecombinantinbredlinesusinganewgeneticmapofmaize.Genetics,174(3):1671-1683.(Epub:2006Sep1)•KalyanaramanA,SAluru,PSSchnable(2006)Turningrepeatstoadvantage:scaffoldinggenomiccontigsusingLTRretrotransposons.ComputSystBioinformaticsConf,5:167-178.(ConferenceWebsite)•Yandeau-NelsonMD,BJNikolau,PSSchnable(2006)Effectsoftrans-actinggeneticmodifiersontheratesanddistributionofmeioticrecombinationacrossthea1-sh2intervalofmaize.Genetics,174(1):101-112.(Epub:2006Jul2.HighlightedbyFacultyof1000Biology)•Yandeau-NelsonMD,YXia,JLi,MGNeuffer,PSSchnable(2006)Unequalsisterchromatidandhomologrecombinationatatandemplicationofthea1locusinmaize.Genetics,173(4):2211-2226.(Epub:2006Jun4)•SkibbeDS,XWang,XZhao,LABorsuk,DSNettleton,PSSchnable(2006)Scanningmicroarraysatmultipleintensitiesenhancesdiscoveryofdifferentiallyexpressedgenes.Bioinformatics,22(15):1863-1870.(Epub:2006May26)•Swanson-WagnerRA*,YJia*,RDeCook,LABorsuk,DSNettleton,PSSchnable(2006)AllpossiblemodesofgeneactionareobservedinaglobalcomparisonofgeneexpressioninamaizeF1hybridanditsinbredparents.PNAS,103(18):6805-6810.(Epub:2006Apr25.HighlightedbyFacultyof1000Biology)•MaherPM,HHChou,EHahn,TJWen,PSSchnable(2006)GRAMA:Ageneticmappingtoolfortheanalysisoftemperaturegradientcapillaryelectrophoresis(TGCE)data.TheorApplGenet,113(1):156-162.(Epub:2006Apr20)2005(13篇)•AshlockDA,RASwanson-Wagner,PSSchnable(2005)Selectionofgeneticallydiverserecombinantinbredswithanorderedgeneevolutionaryalgorithm.CIBCB'05:237-242.•HochholdingerF,KWoll,LGuo,PSSchnable(2005)Theaccumulationofabundantsolubleproteinschangesearlyinthedevelopmentoftheprimaryrootsofmaize(ZeamaysL.).Proteomics,5(18):4885-4893.(Animagefromthismanuscriptwasselectedforinclusiononthecover)•WollK,LABorsuk,HStransky,DSNettleton,PSSchnable,FHochholdinger(2005)Isolation,characterization,andpericycle-specifictranscriptomeanalysesofthenovelmaize(ZeaMaysL.)lateralandseminalrootinitiationmutantrum1.PlantPhysiol,139(3):1255-1267.•FuY*,SJEmrich*,LGuo,TJWen,SAluru,DAAshlock,PSSchnable(2005)Qualityassessmentofmaizeassembledgenomicislands(MAGIs)andlarge-scaleexperimentalverificationofpredictedgenes.PNAS,102(34):12282-12287.•JacksonBG,SAluru,PSSchnable(2005)Consensusgeneticmaps:agraphtheoreticapproach.ComputSystBioinformaticsConf:35-43.•WenTJ,FHochholdinger,MSauer,WBruce,PSSchnable(2005)Theroothairless1geneofmaize(Zeamays)encodesahomologofsec3,whichisinvolvedinpolarexocytosis.PlantPhysiol,138(3):1637-1643.(Epub:2005Jun24;SelectedasanEditors'ChoicebyMaizeGDB,4/07)•HsiaAP,TJWen,HDChen,ZLiu,MDYandeau-Nelson,YWei,LGuo,PSSchnable(2005)TemperatureGradientCapillaryElectrophoresis(TGCE)-AtoolforthehighthroughputdiscoveryandmappingofSNPsandIDPs.TheorApplGenet,111(2):218-225.•DingJ,KViswanathan,DBerleant,ESWurtele,DAAshlock,JADickerson,AFulmer,PSSchnable(2005)UsingthebiologicaltaxonomytoaccessbiologicalliteraturewithPathBinderH.Bioinformatics,21(10):2560-2562.•DietrichCR,MAPerera,MDYandeau-Nelson,RBMeeley,BJNikolau,PSSchnable(2005)Characterizationoftwogl8paralogsrevealsthatthe3-ketoacylrectasecomponentoffattyacidelongaseisessentialformaize(ZeamaysL.)development.PlantJ,42(6):844-861.•YaoH,PSSchnable(2005)Cis-effectsonmeioticrecombinationacrossdistincta1-sh2intervalsinacommonZeageneticbackground.Genetics,170(4):1929-1944.•YaoH,LGuo,YFu,LABorsuk,TJWen,DSSkibbe,XCui,BEScheffler,JCao,SJEmrich,DAAshlock,PSSchnable(2005)Evaluationoffiveabinitiogenepredictionprogramsforthediscoveryofmaizegenes.PlantMolBiol,57(3):445-460.•Yandeau-NelsonMD,QZhou,HYao,XXu,BJNikolau,PSSchnable(2005)MuDRtransposaseincreasesthefrequencyofmeioticcrossoversinthevicinityofaMuinsertioninthemaizea1gene.Genetics,169(2):917-929.•SkibbeDS,PSSchnable(2005)Malesterilityinmaize.Maydica,50:367-376.
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中国农大农学与生物技术学院硕导介绍:谭禄宾
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